gfClient v. 15 - A client for the genomic finding program that produces a .psl file
usage:
   gfClient host port nibDir in.fa out.psl
where
   host is the name of the machine running the gfServer
   port is the same as you started the gfServer with
   nibDir is the path of the nib files relative to the current dir
       (note these are needed by the client as well as the server)
   in.fa a fasta format file.  May contain multiple records
   out.psl where to put the output
options:
   -t=type     Database type.  Type is one of:
                 dna - DNA sequence
                 prot - protein sequence
                 dnax - DNA sequence translated in six frames to protein
               The default is dna
   -q=type     Query type.  Type is one of:
                 dna - DNA sequence
                 rna - RNA sequence
                 prot - protein sequence
                 dnax - DNA sequence translated in six frames to protein
                 rnax - DNA sequence translated in three frames to protein
   -dots=N   Output a dot every N query sequences
   -nohead   Suppresses psl five line header
   -out=type   Controls output file format.  Type is one of:
                   psl - Default.  Tab separated format without actual sequence
                   pslx - Tab separated format with sequence
                   axt - blastz-associated axt format
                   maf - multiz-associated maf format
                   wublast - similar to wublast format
                   blast - similar to NCBI blast format
                   en Path (Nov 2002 from NCBI Build 31) at <FONT