P A U P * Portable version 4.0.0d55 for Unix Wed Mar 13 12:40:41 2002 --------------------------NOTICE------------------------ PAUP* is experimental in this release. Please check your results carefully! -------------------------------------------------------- Tree description: Unrooted tree(s) rooted using outgroup method Optimality criterion = maximum parsimony Character-status summary: Of 496 total characters: All characters are of type 'unord' All characters have equal weight 166 characters are constant 132 variable characters are parsimony-uninformative Number of parsimony-informative characters = 198 Character-state optimization: Accelerated transformation (ACCTRAN) Tree number 1 (rooted using default outgroup) Branch lengths and linkages for tree #1 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- gi|12717899|emb| (1) 16 0 0 0 gi|4503433|ref|N (2) 16 55 0 98 15 16 48 4 103 gi|3122045|sp|O3 (3) 15 6 2 8 14 15 12 0 109 gi|18848240|gb|A (4) 14 4 0 6 13 14 147 79 255 12 13 58 15 175 10 12 34 9 53 gi|6681243|ref|N (5) 10 1 0 14 gi|12857301|dbj| (6) 10 28 27 29 11 12 28 9 90 gi|346390|pir||A (7) 11 1 0 40 gi|2136290|pir|| (8) 11 2 0 3 gi|2494226|sp|Q9 (9) 13 81 22 120 Tree length = 505 Consistency index (CI) = 0.9901 Homoplasy index (HI) = 0.0099 CI excluding uninformative characters = 0.9844 HI excluding uninformative characters = 0.0156 Retention index (RI) = 0.9901 Rescaled consistency index (RC) = 0.9803 f value = 56 f-ratio = 0.0188 (multistate unordered and stepmatrix characters excluded from f-value calculations) /------------------------------------------------------------- gi|12717899|emb| | +------------------------------------------------------------- gi|4503433|ref|N | 16 /--------------------------------------------------- gi|3122045|sp|O3 | | | | /----------------------------------------- gi|18848240|gb|A \--------15 | | | /---------- gi|6681243|ref|N | | /--------10 \--------14 | \---------- gi|12857301|dbj| | /---------12 | | | /---------- gi|346390|pir||A | | \--------11 \--------13 \---------- gi|2136290|pir|| | \------------------------------- gi|2494226|sp|Q9 Note: Multistate unordered and/or stepmatrix characters excluded from patristic distance calculations. Patristic distance matrix Below diagonal: Adjusted character distances Above diagonal: Patristic distances 1 2 3 4 5 6 7 8 9 1 gi|12717899|emb| - 29 35 39 135 142 136 136 133 2 gi|4503433|ref|N 29 - 64 68 164 171 165 165 162 3 gi|3122045|sp|O3 35 64 - 6 102 109 103 103 100 4 gi|18848240|gb|A 39 68 6 - 96 103 97 97 94 5 gi|6681243|ref|N 131 160 100 94 - 7 13 13 48 6 gi|12857301|dbj| 136 165 107 101 7 - 20 20 55 7 gi|346390|pir||A 132 161 101 95 13 20 - 2 49 8 gi|2136290|pir|| 132 161 101 95 13 20 2 - 49 9 gi|2494226|sp|Q9 131 160 100 94 48 55 49 49 - Pairwise homoplasy matrix 1 2 3 4 5 6 7 8 9 1 gi|12717899|emb| - 2 gi|4503433|ref|N 0 - 3 gi|3122045|sp|O3 0 0 - 4 gi|18848240|gb|A 0 0 0 - 5 gi|6681243|ref|N 4 4 2 2 - 6 gi|12857301|dbj| 6 6 2 2 0 - 7 gi|346390|pir||A 4 4 2 2 0 0 - 8 gi|2136290|pir|| 4 4 2 2 0 0 0 - 9 gi|2494226|sp|Q9 2 2 0 0 0 0 0 0 -